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CVE-2024-42360

Command Injection in sequenceserver

9.8 CriticalFix available

SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for personal or group use. Several HTTP endpoints did not properly sanitize user input and/or query parameters. This could be exploited to inject and run unwanted shell commands. This vulnerability has been fixed in 3.1.2.

Attack profile

How easy it is to exploit

Attack vector
Network
Complexity
Low
Privileges needed
None
User interaction
None

What an attacker can affect

Confidentiality
High
Integrity
High
Availability
High

Exploit likelihood

0.58%Up 0.5 points since Aug 15, 2024
90%50%10%1%

What each source reports

CVE List Score used 9.8

Command Injection in sequenceserver

SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for personal or group use. Several HTTP endpoints did not properly sanitize user input and/or query parameters. This could be exploited to inject and run unwanted shell commands. This vulnerability has been fixed in 3.1.2.

Record
CVE-2024-42360
CVSS 3.1
9.8 CriticalCVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:H/A:H
Weakness
CWE-77
Updated
2026-11-02
EUVDEUVD-2024-2640 9.8

SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for personal or group use. Several HTTP endpoints did not properly sanitize user input and/or query parameters. This could be exploited to inject and run unwanted shell commands. This vulnerability has been fixed in 3.1.2.

Record
EUVD-2024-2640
CVSS 3.1
9.8 CriticalCVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:H/A:H
Updated
2026-11-02
GitHub AdvisoriesGHSA-qv32-5wm2-p32h 9.3

Command Injection in sequenceserver

Impact

Several HTTP endpoints did not properly sanitize user input and/or query parameters. This could be exploited to inject and run unwanted shell commands

Patches

Fixed in 3.1.2

Workarounds

No known workarounds

Record
GHSA-qv32-5wm2-p32h
CVSS 4.0
9.3 CriticalCVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:N/VC:H/VI:H/VA:H/SC:N/SI:N/SA:N
CVSS 3.1
9.8 CriticalCVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:H/A:H
Weakness
CWE-77
Updated
2026-11-02
NVD 9.8

SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for personal or group use. Several HTTP endpoints did not properly sanitize user input and/or query parameters. This could be exploited to inject and run unwanted shell commands. This vulnerability has been fixed in 3.1.2.

Record
CVE-2024-42360
CVSS 3.1
9.8 CriticalCVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:H/A:H
Weakness
CWE-77
Updated
2026-11-02
OSV 9.8

Command Injection in sequenceserver

SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for personal or group use. Several HTTP endpoints did not properly sanitize user input and/or query parameters. This could be exploited to inject and run unwanted shell commands. This vulnerability has been fixed in 3.1.2.

Record
CVE-2024-42360
CVSS 3.1
9.8 CriticalCVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:H/A:H
Weakness
CWE-77
Updated
2026-11-02
OSVGHSA-qv32-5wm2-p32h 9.3

Command Injection in sequenceserver

Impact

Several HTTP endpoints did not properly sanitize user input and/or query parameters. This could be exploited to inject and run unwanted shell commands

Patches

Fixed in 3.1.2

Workarounds

No known workarounds

Record
GHSA-qv32-5wm2-p32h
CVSS 4.0
9.3 CriticalCVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:N/VC:H/VI:H/VA:H/SC:N/SI:N/SA:N
CVSS 3.1
9.8 CriticalCVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:H/A:H
Weakness
CWE-77
Updated
2026-11-02

Affected products

Affected packages

Affected packages
PackageAffectedFixed
sequenceserver
RubyGems
before 3.1.2
3.1.2
sequenceserver
RubyGems
before 3.1.2, plus listed versions
0.6.70.6.80.6.90.7.10.7.2
Show 45 moreShow less
0.7.30.7.40.7.50.7.60.7.70.7.80.7.90.8.00.8.10.8.20.8.30.8.40.8.50.8.60.8.70.8.7.beta10.8.91.0.01.0.0.pre.11.0.0.pre.21.0.0.pre.31.0.0.pre.41.0.0.pre.51.0.11.0.101.0.111.0.121.0.131.0.141.0.21.0.31.0.41.0.51.0.61.0.71.0.81.0.91.1.0.beta1.1.0.beta101.1.0.beta111.1.0.beta121.1.0.beta21.1.0.beta31.1.0.beta41.1.0.beta5
3.1.2

History

History
RecordedChangedSources
first indexedCVE List, EUVD, GitHub Advisories, NVD, OSV

Dates are when Every CVE recorded each change. Upstream dates may differ.

In short

CVE-2024-42360 is a critical vulnerability (CVSS 9.8) in Wurmlab Sequenceserver, published August 13, 2024. No source lists public exploit code. EPSS puts the chance of exploitation in the next 30 days at 0.58%, the 48th percentile. Fixed in sequenceserver 3.1.2.

References

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Left out here: 21 versions. The JSON record has them.

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